No self-introduction
Loading
Profile
Follow
codes (2)
Structure map of the gene sequence of Genbank form
4.0
Application background NCBI sequences are described in many genomes, including CDS , DNA, ,, , , , , , , , (join), (1..193290..1284), DNA is two. Many researchers hope that these structural information in the form of graphics display, at a glance, easy analysis. With this Perl script can easily draw graphics, only need to download the sequence down, enter a command automatic graphics success! Key Technology Computer condition: Linux system, I use the Ubuntu system. Online download bioperl installation. Installation is very simple, bioperl download after decompression to a disk, forming a folder. Bio:: Graphics Ubuntu sudo -MCPAN Perl Bio: -e'install: Graphics'can be automatically installed. After the Ubuntu installation of Bio:, bioperl: Graphics, you can CD to these Perl scripts and files in the folder, the Linux terminal input command line, NM_172587.gb > genbankplot.pl; 1.png, get
mypeak 1 0
1
Automatically download large sequences from NCBI
no vote
Application background Windows system, the installation of the Perl environment. Can be based on your search terms or provide the GI number, from the NCBI automatically download large sequence. Can automatically download more than 50000 nucleic acid or protein sequences. Sometimes you need to download the required gene or protein sequences from the GI on the NCBI, the program can be automatically downloaded. Under the windows operating system, you can easily complete, double click the program, automatically run the download sequence. Key Technology Put in any folder double click run. It is equivalent to a sequence of genes or proteins that are on the NCBI home page, and then automatically downloaded to the FASTA format.Modify script for use. Use method as follows:NCBI-- Nucleotide-- mRNA tomato, details Search, mRNA[All WebEnv=$web [All Fields] AND, lycopersicum [orgn]', the OR tomato, the $base [Organism], the efetch.fcgi Fields], the esearch.fc
mypeak 1 0
1
No more~
Follows0
Fans0